STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2143KEGG: hor:Hore_20750 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2508). (90 aa)    
Predicted Functional Partners:
Toce_2142
pro-sigmaK processing inhibitor BofA; InterPro IPR010001; KEGG: amt:Amet_4774 sigmaK-factor processing regulatory BofA; PFAM: sigmaK-factor processing regulatory BofA; SPTR: SigmaK-factor processing regulatory BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: SigmaK-factor processing regulatory protein BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA.
 
    0.917
Toce_0976
KEGG: tit:Thit_1458 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3189).
  
     0.748
Toce_0975
KEGG: tte:TTE1621 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3189).
  
     0.727
Toce_2017
Protein of unknown function DUF1779; InterPro IPR014794; KEGG: tpd:Teth39_2101 hypothetical protein; PFAM: Protein of unknown function DUF1779; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1779).
  
     0.721
Toce_0474
KEGG: amt:Amet_0695 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.714
Toce_1373
KEGG: tte:TTE1185 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.660
Toce_2243
Peptidase M1 membrane alanine aminopeptidase; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: tte:TTE2694 aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Aminopeptidase N; PFAM: Peptidase family M1.
  
     0.642
Toce_1383
KEGG: tte:TTE1137 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unkown function (DUF1901).
  
     0.620
Toce_1522
KEGG: tte:TTE0101 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.590
Toce_1012
KEGG: swo:Swol_0963 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.582
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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