STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2154Integrase catalytic region; InterPro IPR001584; KEGG: adg:Adeg_0459 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; PFAM: Integrase core domain. (384 aa)    
Predicted Functional Partners:
Toce_1163
Transposase mutator type; Required for the transposition of the insertion element.
  
     0.647
Toce_1584
Transposase mutator type; Required for the transposition of the insertion element.
  
     0.643
Toce_2155
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR001958:IPR011701; KEGG: sth:STH2695 multidrug efflux protein; PFAM: major facilitator superfamily MFS_1; SPTR: Multidrug efflux protein; PFAM: Major Facilitator Superfamily.
  
  
 0.485
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.