STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2161DNA polymerase beta domain protein region; InterPro IPR002934; KEGG: chy:CHY_2181 nucleotidyltransferase domain-containing protein; PFAM: DNA polymerase beta domain protein region; SPTR: Putative nucleotidyltransferase domain protein; PFAM: Nucleotidyltransferase domain. (143 aa)    
Predicted Functional Partners:
Toce_2162
Protein of unknown function DUF86; COGs: COG2445 conserved hypothetical protein; InterPro IPR008201; KEGG: ate:Athe_0224 protein of unknown function DUF86; PFAM: protein of unknown function DUF86; SPTR: Putative toxin-antitoxin system, antitoxin component; PFAM: Protein of unknown function DUF86.
   
 
 0.921
Toce_1939
Protein of unknown function DUF86; COGs: COG2445 conserved hypothetical protein; InterPro IPR008201; KEGG: ckr:CKR_1141 hypothetical protein; PFAM: protein of unknown function DUF86; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF86.
   
 
 0.668
Toce_2159
GCN5-related N-acetyltransferase; COGs: COG0456 Acetyltransferase; InterPro IPR022272:IPR000182; KEGG: csc:Csac_2705 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
     
 0.493
Toce_2160
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR003811:IPR002509; KEGG: bpf:BpOF4_11995 chitooligosaccharide deacetylase; PFAM: polysaccharide deacetylase; protein of unknown function DUF205; SPTR: Chitooligosaccharide deacetylase; PFAM: Domain of unknown function (DUF205); Polysaccharide deacetylase; TIGRFAM: polysaccharide deacetylase family sporulation protein PdaB.
       0.491
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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