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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2178InterPro IPR002934; KEGG: gur:Gura_2470 DNA polymerase beta subunit; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase, beta domain protein region; PFAM: Nucleotidyltransferase domain. (105 aa)    
Predicted Functional Partners:
Toce_2177
Signal peptide peptidase A; COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR001907:IPR004635:IPR002142; KEGG: hmo:HM1_1071 signal peptide peptidase SppA, 36k type; PFAM: peptidase S49; SPTR: Signal peptide peptidase sppa, 36k type; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type.
       0.773
Toce_2176
KEGG: tit:Thit_0724 protein of unknown function DUF2143; SPTR: Putative uncharacterized protein; PFAM: Yip1 domain.
       0.723
Toce_2179
Peptidase S16 lon domain protein; COGs: COG1067 ATP-dependent protease; InterPro IPR001984; KEGG: hor:Hore_03380 peptidase S16 lon domain protein; SPTR: Peptidase S16 lon domain protein; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease.
       0.686
Toce_0682
InterPro IPR002934; KEGG: rrs:RoseRS_4091 DNA polymerase beta subunit; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase, beta domain protein region; PFAM: Nucleotidyltransferase domain.
  
     0.630
Toce_0542
InterPro IPR002934; KEGG: pai:PAE0273 hypothetical protein; PFAM: DNA polymerase beta domain protein region; SPTR: Putative uncharacterized protein; PFAM: Nucleotidyltransferase domain.
  
     0.563
Toce_0683
HEPN domain protein; COGs: COG2250 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: adg:Adeg_0040 HEPN domain protein; PFAM: HEPN domain protein; SMART: HEPN domain protein; SPTR: HEPN domain protein; PFAM: HEPN domain.
 
     0.512
Toce_2180
KEGG: dhd:Dhaf_1776 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.471
Toce_1939
Protein of unknown function DUF86; COGs: COG2445 conserved hypothetical protein; InterPro IPR008201; KEGG: ckr:CKR_1141 hypothetical protein; PFAM: protein of unknown function DUF86; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF86.
 
     0.436
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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