Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_2185KEGG: vsa:VSAL_I1269 hypothetical protein; SPTR: Putative uncharacterized protein. (115 aa)    
Predicted Functional Partners:
argS
COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR001412:IPR015945:IPR001278:IPR005148:IPR 008909; KEGG: pth:PTH_2844 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.
       0.522
Toce_2186
TrkA-C domain protein; COGs: COG0490 Putative regulatory ligand-binding protein related to C-terminal domains of K+ channels; InterPro IPR000524:IPR006037; KEGG: tex:Teth514_1200 TrkA domain-containing protein; PFAM: TrkA-C domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: TrkA-C domain protein; PFAM: Bacterial regulatory proteins, gntR family; TrkA-C domain.
       0.464
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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