STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2214Hypothetical protein; KEGG: bwe:BcerKBAB4_1652 putative lipoprotein; SPTR: Putative uncharacterized protein. (304 aa)    
Predicted Functional Partners:
Toce_2215
KEGG: mta:Moth_0956 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: TM2 domain.
  
    0.822
Toce_2216
KEGG: mta:Moth_0955 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.795
Toce_2217
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000838:IPR014284:IPR007627:IPR013249; KEGG: pjd:Pjdr2_0120 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
    0.776
Toce_2213
Nitrate reductase; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006655:IPR006963:IPR006656:IPR006657; KEGG: drm:Dred_1345 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; PRIAM: Nitrate reductase; SPTR: Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.678
Toce_0838
Peptidoglycan-binding lysin domain protein; InterPro IPR002482:IPR018392; KEGG: hor:Hore_02660 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Peptidoglycan-binding LysM; PFAM: LysM domain.
   
   0.500
Toce_2218
KEGG: ppp:PHYPADRAFT_104217 hypothetical protein; SPTR: Predicted protein.
       0.488
Toce_2219
KEGG: sli:Slin_6981 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.488
Toce_2220
KEGG: pab:PAB1767 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.421
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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