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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2237InterPro IPR020390; KEGG: drm:Dred_1679 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2619). (87 aa)    
Predicted Functional Partners:
Toce_0730
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR005829:IPR001411:IPR011701; KEGG: mta:Moth_0116 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
 
    0.817
Toce_2241
Protein of unknown function DUF441; COGs: COG2707 membrane protein; InterPro IPR007382; KEGG: mta:Moth_0120 hypothetical protein; PFAM: protein of unknown function DUF441; SPTR: UPF0756 membrane protein Moth_0120; PFAM: Protein of unknown function (DUF441).
 
     0.789
Toce_0899
Membrane protein of unknown function; InterPro IPR007165; KEGG: mta:Moth_0580 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: Putative uncharacterized protein; PFAM: Membrane protein of unknown function.
  
     0.680
Toce_2236
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cth:Cthe_2333 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.594
Toce_1318
InterPro IPR014194; KEGG: dae:Dtox_2607 stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; SPTR: Stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
 
    0.593
Toce_2235
COGs: COG5002 Signal transduction histidine kinase; InterProIPR005467:IPR000014:IPR003660:IPR003661:IPR 003594:IPR004358:IPR013767; KEGG: aoe:Clos_2783 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; SPTR: Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histid [...]
       0.586
Toce_1321
InterPro IPR014198; KEGG: drm:Dred_1057 stage III sporulation protein SpoAB; PFAM: Sporulation stage III protein AB; SPTR: Stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
 
    0.559
Toce_1765
COGs: COG1067 ATP-dependent protease; InterProIPR014251:IPR003959:IPR001984:IPR003593:IPR 008268; KEGG: drm:Dred_2560 ATPase central domain-containing protein; PFAM: AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: AAA ATPase; SPTR: Endopeptidase La; TIGRFAM: ATP-dependent protease LonB; PFAM: ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease LonB; lon-related putative ATP-dependent protease.
  
    0.558
Toce_0037
KEGG: mta:Moth_0200 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.547
Toce_1012
KEGG: swo:Swol_0963 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.546
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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