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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2240Substrate-binding region of ABC-type glycine betaine transport system; COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR007210; KEGG: sth:STH1653 ABC transporter substrate-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SPTR: ABC transporter substrate-binding protein; PFAM: NMT1/THI5 like. (355 aa)    
Predicted Functional Partners:
Toce_2239
Binding-protein-dependent transport systems inner membrane component; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: avn:Avin_30900 ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.971
Toce_2238
ABC transporter related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: tgr:Tgr7_3083 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter.
 
  
 0.953
Toce_1344
Binding-protein-dependent transport systems inner membrane component; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: hor:Hore_14750 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.827
Toce_1612
Binding-protein-dependent transport systems inner membrane component; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: rpc:RPC_0846 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.817
Toce_1611
ABC transporter related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439:IPR003593:IPR001827:IPR017871; KEGG: sti:Sthe_2706 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter.
 
  
 0.767
Toce_1345
ABC transporter related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: hor:Hore_14760 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Taurine ABC transporter, ATP-binding protein; PFAM: ABC transporter.
 
  
 0.699
Toce_0082
InterPro IPR001455; KEGG: chy:CHY_0625 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.663
Toce_0084
InterPro IPR007272; KEGG: tex:Teth514_0045 protein of unknown function DUF395, YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395).
  
     0.584
Toce_2241
Protein of unknown function DUF441; COGs: COG2707 membrane protein; InterPro IPR007382; KEGG: mta:Moth_0120 hypothetical protein; PFAM: protein of unknown function DUF441; SPTR: UPF0756 membrane protein Moth_0120; PFAM: Protein of unknown function (DUF441).
       0.535
Toce_0085
InterPro IPR007272; KEGG: tit:Thit_0078 protein of unknown function DUF395 YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395).
  
     0.532
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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