STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG78536.1PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: amt:Amet_1433 YbaK/prolyl-tRNA synthetase associated region. (155 aa)    
Predicted Functional Partners:
EEG76497.1
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: bca:BCE_1750 flagellar motor switch protein.
    
   0.870
EEG76498.1
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: hmo:HM1_2236 flagellar motor switch protein FliN, putative.
    
   0.870
EEG76517.1
PFAM: surface presentation of antigens (SPOA) protein; KEGG: gtn:GTNG_1084 flagellar motor switch protein.
    
   0.870
EEG78534.1
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aoe:Clos_1197 transcriptional regulator, LysR family.
       0.778
EEG78535.1
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: cbf:CLI_3878 cysteine desulfurase family protein.
       0.773
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: drm:Dred_2409 flagellar hook-basal body complex subunit FliE.
  
 
   0.677
EEG76523.1
PFAM: flagellar hook capping protein; KEGG: nca:Noca_0752 flagellar hook capping protein.
    
   0.628
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
     
 0.593
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.592
EEG78537.1
TIGRFAM: small acid-soluble spore protein, H-type; KEGG: hmo:HM1_1019 small, acid-soluble spore protein h 1.
       0.588
Your Current Organism:
Dethiobacter alkaliphilus
NCBI taxonomy Id: 555088
Other names: D. alkaliphilus AHT 1, Dethiobacter alkaliphilus AHT 1, Dethiobacter alkaliphilus DSM 19026, Dethiobacter alkaliphilus str. AHT 1, Dethiobacter alkaliphilus strain AHT 1
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