STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG78386.1KEGG: drm:Dred_1044 hypothetical protein. (116 aa)    
Predicted Functional Partners:
EEG78387.1
KEGG: dau:Daud_0961 hypothetical protein.
       0.773
EEG78385.1
KEGG: dau:Daud_0963 hypothetical protein.
       0.682
EEG78388.1
PFAM: regulatory protein GntR HTH; KEGG: cpy:Cphy_2319 transcriptional regulator, GntR family.
       0.427
EEG78389.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_3242 ABC transporter related.
       0.427
EEG78390.1
KEGG: amt:Amet_1325 hypothetical protein.
       0.427
Your Current Organism:
Dethiobacter alkaliphilus
NCBI taxonomy Id: 555088
Other names: D. alkaliphilus AHT 1, Dethiobacter alkaliphilus AHT 1, Dethiobacter alkaliphilus DSM 19026, Dethiobacter alkaliphilus str. AHT 1, Dethiobacter alkaliphilus strain AHT 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.