STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG78411.1KEGG: rfr:Rfer_3886 hypothetical protein. (129 aa)    
Predicted Functional Partners:
EEG78410.1
PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein.
  
 0.998
EEG78413.1
PFAM: D-Lysine 56-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit.
 
  
 0.960
EEG78412.1
PFAM: cobalamin B12-binding domain protein; KEGG: aoe:Clos_0422 cobalamin B12-binding domain protein.
 
     0.957
EEG78408.1
KEGG: rfr:Rfer_3890 alcohol dehydrogenase, zinc-binding.
 
   
 0.945
EEG78409.1
KEGG: amt:Amet_4551 hypothetical protein.
 
     0.945
EEG76163.1
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein.
  
 0.840
EEG78414.1
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: fnu:FN0648 Exoenzyme regulatory protein AepA precursor.
       0.713
EEG77140.1
PFAM: thioesterase superfamily protein; KEGG: tte:TTE1814 predicted thioesterase.
  
 
 0.626
sucC
succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
     
 0.569
EEG78459.1
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.546
Your Current Organism:
Dethiobacter alkaliphilus
NCBI taxonomy Id: 555088
Other names: D. alkaliphilus AHT 1, Dethiobacter alkaliphilus AHT 1, Dethiobacter alkaliphilus DSM 19026, Dethiobacter alkaliphilus str. AHT 1, Dethiobacter alkaliphilus strain AHT 1
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