STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (343 aa)    
Predicted Functional Partners:
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   0.871
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.825
EEG77071.1
PFAM: cell wall hydrolase/autolysin; KEGG: oih:OB3141 sporulation specific N-acetylmuramoyl-L-alanine amidase.
 
 
 0.776
EEG76593.1
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: hmo:HM1_0751 hydrolase, TatD family.
     
 0.769
EEG78631.1
PFAM: polysaccharide deacetylase; Sporulation domain protein; KEGG: cth:Cthe_0557 polysaccharide deacetylase.
  
 
 0.768
EEG76253.1
PFAM: polysaccharide deacetylase; KEGG: aoe:Clos_2018 polysaccharide deacetylase.
  
 
 0.768
EEG77667.1
N-acetylmuramoyl-L-alanine amidase; PFAM: SH3 domain protein; cell wall hydrolase/autolysin; SH3 type 3 domain protein; KEGG: pth:PTH_0786 hypothetical protein.
  
 
 0.674
EEG78953.1
TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; PFAM: cell wall hydrolase/autolysin; KEGG: gtn:GTNG_0140 N-acetylmuramoyl-L-alanine amidase.
  
 
 0.673
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.665
EEG77854.1
Carboxyl-terminal protease; KEGG: bha:BH3599 carboxy-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; Peptidoglycan-binding domain 1 protein; peptidase S41; Belongs to the peptidase S41A family.
     
 0.658
Your Current Organism:
Dethiobacter alkaliphilus
NCBI taxonomy Id: 555088
Other names: D. alkaliphilus AHT 1, Dethiobacter alkaliphilus AHT 1, Dethiobacter alkaliphilus DSM 19026, Dethiobacter alkaliphilus str. AHT 1, Dethiobacter alkaliphilus strain AHT 1
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