STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG76096.1KEGG: gsu:GSU2433 ATP-dependent protease, putative. (66 aa)    
Predicted Functional Partners:
EEG76097.1
PFAM: protein of unknown function DUF192; KEGG: drm:Dred_2119 protein of unknown function DUF192.
       0.576
EEG76098.1
PFAM: type II secretion system protein; KEGG: drm:Dred_2118 type II secretion system protein.
       0.507
EEG76099.1
PFAM: type II secretion system protein; KEGG: drm:Dred_2117 type II secretion system protein.
       0.498
EEG77280.1
KEGG: tex:Teth514_0252 hypothetical protein.
  
     0.474
EEG76100.1
PFAM: type II secretion system protein E; KEGG: drm:Dred_2116 type II secretion system protein E.
       0.474
EEG76101.1
PFAM: response regulator receiver; Cobyrinic acid ac-diamide synthase; KEGG: pth:PTH_1450 response regulator.
       0.443
Your Current Organism:
Dethiobacter alkaliphilus
NCBI taxonomy Id: 555088
Other names: D. alkaliphilus AHT 1, Dethiobacter alkaliphilus AHT 1, Dethiobacter alkaliphilus DSM 19026, Dethiobacter alkaliphilus str. AHT 1, Dethiobacter alkaliphilus strain AHT 1
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