STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56553.1Putative glyoxylate-induced protein; COG3622 Hydroxypyruvate isomerase. (308 aa)    
Predicted Functional Partners:
EKF55442.1
Lactate dehydrogenase-like protein; COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
  0.871
EKF54706.1
Hypothetical protein.
  
     0.681
EKF55978.1
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
  
    0.680
EKF54705.1
Oxidoreductase, GMC family protein; COG2303 Choline dehydrogenase and related flavoproteins.
 
     0.639
EKF56881.1
Hypothetical protein.
 
   
 0.607
EKF55408.1
Periplasmic protein.
  
     0.587
EKF56623.1
COG0673 Predicted dehydrogenases and related proteins.
 
    0.584
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.581
EKF55146.1
Hypothetical protein.
  
     0.580
EKF56354.1
COG0673 Predicted dehydrogenases and related proteins.
 
    0.472
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.