STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56811.1Lyase; COG0346 Lactoylglutathione lyase and related lyases. (137 aa)    
Predicted Functional Partners:
EKF55763.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit; overlaps another CDS with the same product name.
  
 0.977
EKF53955.1
LAO/AO transport system ATPase; COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family.
    0.973
EKF55762.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit; overlaps another CDS with the same product name.
 
  
 0.968
EKF56072.1
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 
 0.911
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
 
 0.860
trpF
COG0135 Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
   
  0.742
EKF54118.1
Beta-lactamase; COG0491 Zn-dependent hydrolases, including glyoxylases.
   
 
  0.700
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.605
EKF56809.1
Hypothetical protein; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
       0.603
EKF54957.1
Rhodanese domain protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
   
 
 0.574
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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