STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56297.1Glycoside hydrolase family protein; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family. (441 aa)    
Predicted Functional Partners:
EKF56298.1
Glycoside hydrolase.
 
 
  0.942
EKF56854.1
Hypothetical protein; COG4677 Pectin methylesterase.
  
 0.917
EKF55360.1
Rhamnogalacturonan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
  0.914
EKF55359.1
Pectate lyase; COG4677 Pectin methylesterase.
  
 0.886
EKF56299.1
Glycosyl hydrolase; COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
    0.851
EKF56286.1
Carbohydrate esterase family 12 protein; COG2755 Lysophospholipase L1 and related esterases.
 
  0.843
EKF56288.1
GDSL family lipase; COG2755 Lysophospholipase L1 and related esterases.
  
 
  0.839
EKF56292.1
Lipoprotein.
  
 
   0.790
EKF55358.1
Rhamnogalacturonides degradation protein RhiN; COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
     0.790
EKF56293.1
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.710
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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