STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56339.1Hypothetical protein; COG4591 ABC-type transport system, involved in lipoprotein release, permease component. (411 aa)    
Predicted Functional Partners:
lolD
ABC transporter ATPase; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
  0.965
EKF56809.1
Hypothetical protein; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
  
  
 
0.906
EKF54618.1
ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
   
  0.791
EKF54937.1
Outer membrane lipoprotein carrier protein lola.
 
 
 
 0.760
EKF56572.1
Phosphonate-transporting ATPase; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
   
  0.715
EKF54614.1
Phosphonate-transporting ATPase; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
   
  0.715
EKF55837.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.696
EKF56338.1
COG3876 Uncharacterized protein conserved in bacteria.
       0.661
EKF55876.1
COG1579 Zn-ribbon protein, possibly nucleic acid-binding.
  
     0.614
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination.
  
     0.612
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.