STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56379.1Glycosyl hydrolase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (514 aa)    
Predicted Functional Partners:
EKF56517.1
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
     0.967
EKF55445.1
Glycosyl hydrolase; COG3507 Beta-xylosidase.
     0.947
EKF56516.1
alpha-N-arabinofuranosidase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.922
EKF55193.1
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
  
  0.833
EKF54785.1
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.802
EKF55960.1
alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.799
EKF55447.1
COG3693 Beta-1,4-xylanase.
  
  0.791
EKF56262.1
Glycoside hydrolase family protein.
  
 
  0.712
EKF56519.1
Esterase; COG2382 Enterochelin esterase and related enzymes.
  
  0.706
EKF55192.1
Hypothetical protein.
  
     0.694
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.