STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56499.1RagB/SusD domain-containing protein; COG1219 ATP-dependent protease Clp, ATPase subunit. (534 aa)    
Predicted Functional Partners:
atpE
ATP synthase F0 subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.962
EKF56498.1
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
     0.941
EKF54701.1
TonB-dependent receptor.
 
     0.735
EKF56502.1
COG3533 Uncharacterized protein conserved in bacteria.
  
     0.723
EKF55639.1
RagB/SusD domain-containing protein.
  
     0.721
EKF55638.1
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.695
EKF56503.1
Hypothetical protein.
  
     0.678
EKF55961.1
TonB-dependent receptor plug; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
 
     0.666
EKF54599.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.628
EKF54375.1
TonB-dependent receptor plug; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
 
     0.606
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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