STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56503.1Hypothetical protein. (901 aa)    
Predicted Functional Partners:
EKF56502.1
COG3533 Uncharacterized protein conserved in bacteria.
     0.914
EKF56501.1
Prolyl oligopeptidase; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
 
     0.777
EKF56499.1
RagB/SusD domain-containing protein; COG1219 ATP-dependent protease Clp, ATPase subunit.
  
     0.678
EKF54369.1
Glycoside hydrolase; COG3507 Beta-xylosidase.
  
     0.641
EKF56498.1
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.565
EKF54372.1
Hypothetical protein.
  
     0.552
EKF56288.1
GDSL family lipase; COG2755 Lysophospholipase L1 and related esterases.
  
     0.534
EKF55033.1
Glycoside hydrolase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.522
EKF56278.1
Hypothetical protein.
  
     0.489
EKF55192.1
Hypothetical protein.
  
     0.471
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.