STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56123.1COG0044 Dihydroorotase and related cyclic amidohydrolases. (433 aa)    
Predicted Functional Partners:
pyrB
COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 0.999
pyrD
Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.983
EKF54322.1
COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase.
 
 
 0.943
EKF54282.1
Phosphoribosyltransferase; COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase.
 
 
 0.920
carA
COG0505 Carbamoylphosphate synthase small subunit; Belongs to the CarA family.
  
 0.904
EKF56638.1
COG0044 Dihydroorotase and related cyclic amidohydrolases.
  
  
 
0.903
EKF56378.1
COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).
 
 
 0.876
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
 
 0.832
EKF56125.1
Carboxylesterase; COG0400 Predicted esterase.
   
   0.827
EKF56122.1
Double-transmembrane region domain-containing protein.
       0.817
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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