STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56201.1Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (242 aa)    
Predicted Functional Partners:
EKF56199.1
COG1984 Allophanate hydrolase subunit 2.
 
 0.999
EKF56200.1
Hypothetical protein; COG2049 Allophanate hydrolase subunit 1.
 
 0.999
EKF55426.1
COG1012 NAD-dependent aldehyde dehydrogenases.
   
 
  0.908
EKF54660.1
Glutamate--ammonia ligase; COG0174 Glutamine synthetase.
   
 
  0.869
EKF56033.1
COG0506 Proline dehydrogenase.
   
 
  0.696
EKF54466.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
   
    0.548
EKF55659.1
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
   
    0.534
EKF56202.1
Transporter; COG4146 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.493
EKF56260.1
Succinate-semialdehyde dehydrogenase (nad(p)(+)); COG1012 NAD-dependent aldehyde dehydrogenases.
   
 
  0.451
EKF55988.1
COG1012 NAD-dependent aldehyde dehydrogenases.
   
 
  0.451
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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