STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55835.1Hypothetical protein. (235 aa)    
Predicted Functional Partners:
EKF55838.1
COG2825 Outer membrane protein.
 
 
   0.872
EKF55837.1
COG4775 Outer membrane protein/protective antigen OMA87.
 
 
   0.856
EKF53879.1
OmpA family protein; COG0457 FOG: TPR repeat.
  
 
 0.856
EKF55833.1
Hypothetical protein; COG0517 FOG: CBS domain.
 
     0.826
EKF54504.1
OmpA-like outer membrane protein; COG0457 FOG: TPR repeat.
  
 
 0.823
EKF55836.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.804
EKF55435.1
PorT protein.
 
     0.777
EKF56746.1
Hypothetical protein.
  
     0.766
EKF56584.1
Hypothetical protein.
  
     0.761
EKF55930.1
Gliding motility membrane lipoprotein.
  
     0.757
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.