STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55876.1COG1579 Zn-ribbon protein, possibly nucleic acid-binding. (259 aa)    
Predicted Functional Partners:
EKF55877.1
Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.929
EKF55379.1
RNA polymerase Rpb6.
 
     0.747
EKF55837.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.735
EKF54818.1
COG1734 DnaK suppressor protein.
  
     0.713
EKF56642.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.703
EKF54324.1
Hypothetical protein.
  
     0.702
EKF55666.1
Two-component system-sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
   
 
  0.694
EKF55785.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.679
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
     0.679
EKF55861.1
Hypothetical protein.
  
     0.672
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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