STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55658.1Exonuclease; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (223 aa)    
Predicted Functional Partners:
EKF55657.1
Hypothetical protein; COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains.
  
  0.955
EKF55108.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
    
 0.899
EKF55625.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.884
EKF56042.1
COG1466 DNA polymerase III, delta subunit.
    
 0.879
EKF56764.1
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
     
 0.871
EKF56272.1
COG0587 DNA polymerase III, alpha subunit.
    
 0.871
EKF54677.1
Exonuclease; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
    
  0.869
EKF56062.1
Nuclease; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
  
 
0.788
EKF55158.1
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
  
 
0.765
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.410
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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