STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55809.1COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; Belongs to the glycosyl hydrolase 26 family. (1233 aa)    
Predicted Functional Partners:
EKF55808.1
Hypothetical protein; COG3250 Beta-galactosidase/beta-glucuronidase.
 
  
  0.937
EKF54736.1
COG0726 Predicted xylanase/chitin deacetylase.
  
 
 0.785
EKF56301.1
Bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; COG0380 Trehalose-6-phosphate synthase.
  
 
 0.778
EKF56433.1
COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.
  
  
 0.692
EKF54517.1
Hypothetical protein.
  
 
 0.675
EKF55094.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.623
EKF56593.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.622
EKF55277.1
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
  
  
 0.603
EKF56732.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.579
EKF56746.1
Hypothetical protein.
  
 
 0.579
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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