STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55461.1Hypothetical protein. (265 aa)    
Predicted Functional Partners:
EKF54404.1
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
 0.914
EKF54718.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.812
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
      0.800
EKF54504.1
OmpA-like outer membrane protein; COG0457 FOG: TPR repeat.
   
 
 0.800
EKF53879.1
OmpA family protein; COG0457 FOG: TPR repeat.
   
 
 0.800
EKF56068.1
Hypothetical protein.
  
     0.771
EKF54717.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.766
EKF55330.1
Peptidoglycan-binding lysin domain-containing protein; COG1388 FOG: LysM repeat.
  
     0.740
EKF56770.1
Hypothetical protein.
  
     0.738
EKF54716.1
Hypothetical protein.
  
     0.735
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.