STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (400 aa)    
Predicted Functional Partners:
uxaC
COG1904 Glucuronate isomerase.
 
  
 0.964
EKF55341.1
D-mannonate oxidoreductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  0.928
EKF55346.1
COG0524 Sugar kinases, ribokinase family.
 
  
 0.882
EKF55352.1
COG2721 Altronate dehydratase.
 
 
 0.847
EKF55340.1
Cupin; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.807
EKF55351.1
COG0246 Mannitol-1-phosphate/altronate dehydrogenases.
 
 0.779
EKF55338.1
Hypothetical protein.
       0.711
EKF55339.1
Dehydrogenase; COG0673 Predicted dehydrogenases and related proteins.
       0.711
EKF56789.1
RpiB/LacA/LacB family sugar-phosphate isomerase; COG0698 Ribose 5-phosphate isomerase RpiB.
   
 
  0.678
EKF56487.1
RpiB/LacA/LacB family sugar-phosphate isomerase; COG0698 Ribose 5-phosphate isomerase RpiB.
   
 
  0.678
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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