STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55135.1COG0659 Sulfate permease and related transporters (MFS superfamily). (515 aa)    
Predicted Functional Partners:
EKF55136.1
Carbonate dehydratase; COG0288 Carbonic anhydrase.
 
 
 0.991
EKF54334.1
Glutamate synthase (NADPH) large subunit; COG0067 Glutamate synthase domain 1.
 
   
  0.872
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.775
EKF56135.1
Hypothetical protein.
    
   0.749
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.704
EKF54587.1
Ankyrin-like protein; COG0666 FOG: Ankyrin repeat.
    
   0.633
EKF54539.1
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
    
   0.633
EKF54014.1
Ankyrin; COG0666 FOG: Ankyrin repeat.
    
   0.633
EKF55134.1
Hypothetical protein.
       0.574
EKF55132.1
Aerotolerance protein BatD.
       0.440
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.