STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55185.1COG4771 Outer membrane receptor for ferrienterochelin and colicins. (970 aa)    
Predicted Functional Partners:
EKF55183.1
Starch utilization lipoprotein.
 
 
   0.958
EKF55184.1
Starch utilization lipoprotein.
 
     0.946
EKF55182.1
Cytoplasmic alpha-amylase; COG0366 Glycosidases.
 
     0.714
EKF54221.1
Hypothetical protein; COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.
  
     0.706
EKF56581.1
TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.601
EKF55691.1
Hypothetical protein.
   
   0.601
EKF54222.1
Alpha-glucosidase; COG0422 Thiamine biosynthesis protein ThiC.
  
     0.579
EKF55461.1
Hypothetical protein.
   
   0.558
EKF55186.1
Putative lacI family transcriptional regulator; COG1609 Transcriptional regulators.
 
     0.527
EKF55639.1
RagB/SusD domain-containing protein.
  
     0.475
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.