STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55038.1COG4185 Uncharacterized protein conserved in bacteria. (116 aa)    
Predicted Functional Partners:
EKF56002.1
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
    
 
 0.554
EKF54622.1
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
    
 
 0.554
EKF54307.1
helix-turN-helix domain protein.
    
 
 0.554
EKF54048.1
Helix-turn-helix domain-containing protein; COG1396 Predicted transcriptional regulators.
    
 
 0.554
EKF55039.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.477
EKF53911.1
Hypothetical protein; COG1106 Predicted ATPases.
  
     0.409
EKF55040.1
Hypothetical protein; COG1409 Predicted phosphohydrolases.
 
     0.405
EKF54301.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.