STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF54874.1Putative two component sigma-54 specific transcriptional regulator; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (387 aa)    
Predicted Functional Partners:
EKF55597.1
Sugar-binding sensor histidine kinase/response regulator hybrid; COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.939
EKF56661.1
COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation.
 0.891
EKF55037.1
Two-component system sensor histidine kinase/response regulator,hybrid ('one-component system'); COG0642 Signal transduction histidine kinase.
  
 0.826
EKF54721.1
COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog.
 
  
 0.825
EKF55666.1
Two-component system-sensor histidine kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.801
EKF56491.1
COG0642 Signal transduction histidine kinase.
 
 0.747
EKF54621.1
Two-component system sensor histidine kinase; COG0642 Signal transduction histidine kinase.
  
 0.702
EKF54266.1
PAS/PAC sensor signal transduction histidine kinase; COG3292 Predicted periplasmic ligand-binding sensor domain.
  
 0.697
EKF55879.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
 0.675
EKF55171.1
Hypothetical protein; COG1994 Zn-dependent proteases.
  
 0.672
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.