STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF54720.1Transmembrane protein. (70 aa)    
Predicted Functional Partners:
EKF55900.1
Phosphatidylserine decarboxylase; COG4281 Acyl-CoA-binding protein.
  
     0.774
EKF54885.1
Hypothetical protein.
  
     0.767
EKF55481.1
COG2819 Predicted hydrolase of the alpha/beta superfamily.
  
     0.761
EKF56140.1
Hypothetical protein.
  
     0.752
EKF55632.1
Hypothetical protein.
  
     0.749
EKF55128.1
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
 
     0.748
EKF56463.1
Hypothetical protein.
  
     0.742
EKF56372.1
Hypothetical protein; COG2388 Predicted acetyltransferase.
  
     0.736
EKF56641.1
Hypothetical protein.
  
     0.733
EKF55794.1
Hypothetical protein.
  
     0.732
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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