STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF54627.1Hypothetical protein; COG0226 ABC-type phosphate transport system, periplasmic component. (304 aa)    
Predicted Functional Partners:
EKF54628.1
Fibronectin, type III.
 
     0.946
EKF53879.1
OmpA family protein; COG0457 FOG: TPR repeat.
  
     0.738
EKF53881.1
Hypothetical protein.
  
     0.679
EKF54316.1
OmpA/MotB family outer membrane protein; COG0457 FOG: TPR repeat.
  
     0.653
EKF54863.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
     
 0.598
EKF54161.1
Putative HlyD-family transporter; COG0845 Membrane-fusion protein.
  
   0.528
EKF53882.1
Hypothetical protein.
  
     0.527
EKF54626.1
Hypothetical protein.
       0.522
EKF55094.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.521
EKF55713.1
Molybdopterin oxidoreductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.519
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.