STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF54039.1Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (397 aa)    
Predicted Functional Partners:
EKF54906.1
COG0153 Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 0.979
EKF54182.1
COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.935
EKF54046.1
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
  0.795
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.745
EKF54036.1
Ribulokinase; COG1069 Ribulose kinase; Belongs to the ribulokinase family.
 
     0.733
EKF54044.1
ROK family member transcriptional repressor; COG1940 Transcriptional regulator/sugar kinase.
    
 0.731
EKF55034.1
COG3250 Beta-galactosidase/beta-glucuronidase.
  
 
  0.714
araD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
  
 0.713
EKF54040.1
Sodium:solute symporter family protein; COG4146 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.687
EKF54905.1
COG1085 Galactose-1-phosphate uridylyltransferase.
 
 0.677
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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