STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF53833.1COG0394 Protein-tyrosine-phosphatase. (204 aa)    
Predicted Functional Partners:
EKF53832.1
Hypothetical protein.
 
     0.937
EKF53834.1
Arsenical-resistance protein; COG0798 Arsenite efflux pump ACR3 and related permeases.
  
  
 0.794
EKF54957.1
Rhodanese domain protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
   0.778
EKF54117.1
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
   0.778
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.704
EKF56048.1
Hypothetical protein.
  
   0.622
EKF56405.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.602
EKF54310.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.602
EKF53831.1
COG0640 Predicted transcriptional regulators.
  
    0.602
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.580
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.