STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI33062.1Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family. (127 aa)    
Predicted Functional Partners:
SDJ45959.1
Putative Holin-X, holin superfamily III.
  
  
 0.828
SDI33048.1
Hypothetical protein.
       0.811
SDI68323.1
ABC-type uncharacterized transport system, substrate-binding protein.
  
     0.627
SDI84996.1
Osmotically inducible protein OsmC.
   
  
 0.612
SDI51632.1
Hypothetical protein.
  
     0.580
SDI68331.1
ABC-type nickel/cobalt efflux system, permease component RcnA; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.567
SDJ16268.1
Hypothetical protein.
 
  
 0.563
SDI73067.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
    0.494
SDI80075.1
Nucleotide-binding universal stress protein, UspA family.
  
    0.481
SDI33019.1
protein-L-isoaspartate(D-aspartate) O-methyltransferase.
       0.480
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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