Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI11750.1 | betI | SAMN04487993_1001119 | SAMN04487993_100399 | Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.433 |
SDI13051.1 | SDI13087.1 | SAMN04487993_1001182 | SAMN04487993_1001184 | Glycine betaine/proline transport system ATP-binding protein. | Glycine betaine/proline transport system substrate-binding protein. | 0.999 |
SDI13051.1 | betI | SAMN04487993_1001182 | SAMN04487993_100399 | Glycine betaine/proline transport system ATP-binding protein. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.473 |
SDI13087.1 | SDI13051.1 | SAMN04487993_1001184 | SAMN04487993_1001182 | Glycine betaine/proline transport system substrate-binding protein. | Glycine betaine/proline transport system ATP-binding protein. | 0.999 |
SDI13087.1 | SDI80279.1 | SAMN04487993_1001184 | SAMN04487993_101098 | Glycine betaine/proline transport system substrate-binding protein. | Choline-sulfatase. | 0.415 |
SDI13087.1 | betI | SAMN04487993_1001184 | SAMN04487993_100399 | Glycine betaine/proline transport system substrate-binding protein. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.824 |
SDI31341.1 | SDI31367.1 | SAMN04487993_100395 | SAMN04487993_100396 | Hypothetical protein. | Endonuclease YncB, thermonuclease family. | 0.634 |
SDI31341.1 | SDI31380.1 | SAMN04487993_100395 | SAMN04487993_100397 | Hypothetical protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.429 |
SDI31341.1 | betI | SAMN04487993_100395 | SAMN04487993_100399 | Hypothetical protein. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.496 |
SDI31367.1 | SDI31341.1 | SAMN04487993_100396 | SAMN04487993_100395 | Endonuclease YncB, thermonuclease family. | Hypothetical protein. | 0.634 |
SDI31367.1 | SDI31380.1 | SAMN04487993_100396 | SAMN04487993_100397 | Endonuclease YncB, thermonuclease family. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.574 |
SDI31367.1 | betB | SAMN04487993_100396 | SAMN04487993_100398 | Endonuclease YncB, thermonuclease family. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.458 |
SDI31367.1 | betI | SAMN04487993_100396 | SAMN04487993_100399 | Endonuclease YncB, thermonuclease family. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.577 |
SDI31380.1 | SDI31341.1 | SAMN04487993_100397 | SAMN04487993_100395 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Hypothetical protein. | 0.429 |
SDI31380.1 | SDI31367.1 | SAMN04487993_100397 | SAMN04487993_100396 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Endonuclease YncB, thermonuclease family. | 0.574 |
SDI31380.1 | SDI31445.1 | SAMN04487993_100397 | SAMN04487993_1003100 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Hypothetical protein. | 0.406 |
SDI31380.1 | betB | SAMN04487993_100397 | SAMN04487993_100398 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.882 |
SDI31380.1 | betI | SAMN04487993_100397 | SAMN04487993_100399 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.763 |
SDI31445.1 | SDI31380.1 | SAMN04487993_1003100 | SAMN04487993_100397 | Hypothetical protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.406 |
SDI31445.1 | betB | SAMN04487993_1003100 | SAMN04487993_100398 | Hypothetical protein. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.559 |
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