STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI42623.1TRAP-type C4-dicarboxylate transport system, small permease component. (161 aa)    
Predicted Functional Partners:
SDI42604.1
C4-dicarboxylate transporter, DctM subunit.
 
  0.945
SDI42633.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.907
SDI42696.1
Hypothetical protein.
 
     0.809
SDI42651.1
Transcriptional regulator, IclR family.
 
     0.768
SDI42590.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.709
SDI42665.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.649
SDI42685.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.646
SDJ39204.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.629
SDI39281.1
C4-dicarboxylate transporter, DctQ subunit.
  
  
  0.518
SDI61869.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
 
0.509
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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