STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI37920.1Glycine/D-amino acid oxidase. (418 aa)    
Predicted Functional Partners:
SDJ22680.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.965
SDI61727.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.960
SDJ25562.1
Glutamate synthase (NADPH) large subunit.
    
 0.834
SDI37922.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
       0.773
SDI37947.1
Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-).
       0.768
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.703
SDJ17251.1
L-glutamine synthetase.
 
 
  0.687
SDI37953.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 
  0.672
SDI43297.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.651
SDI37897.1
Recombination protein MgsA.
       0.628
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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