STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI48419.1Altronate hydrolase. (505 aa)    
Predicted Functional Partners:
SDI48549.1
Tagaturonate reductase.
  
 0.917
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.837
SDI68468.1
2-keto-3-deoxygluconate kinase.
 
  
 0.824
SDI48443.1
Hypothetical protein.
 
     0.808
SDI48463.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-).
  
    0.765
SDI86942.1
Delta1-piperideine-2-carboxylate reductase; Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.728
SDI09801.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
  
 0.725
SDJ08623.1
Ribose 5-phosphate isomerase B.
     
 0.692
SDI86832.1
Mannitol 2-dehydrogenase.
 
  
 0.633
SDI48515.1
DNA-binding transcriptional regulator, GntR family.
 
     0.565
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.