STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI46629.1Transcriptional regulator, GntR family. (216 aa)    
Predicted Functional Partners:
SDI46571.1
Glycine/D-amino acid oxidase.
 
     0.916
SDI46606.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.897
SDI46582.1
Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase.
  
  0.840
SDI91023.1
Transcriptional regulator, GntR family.
  
     0.756
SDI38004.1
Transcriptional regulator, GntR family.
  
     0.755
SDJ03481.1
DNA-binding transcriptional regulator, GntR family.
  
     0.752
SDJ08197.1
DNA-binding transcriptional regulator, GntR family.
  
     0.733
SDI63619.1
DNA-binding transcriptional regulator, GntR family.
  
     0.727
SDI20120.1
Transcriptional regulator, GntR family.
  
     0.709
SDI41550.1
DNA-binding transcriptional regulator, GntR family.
  
     0.708
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.