STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI55949.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-). (427 aa)    
Predicted Functional Partners:
SDI55975.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  0.941
SDI55968.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-).
 
  0.931
SDI55915.1
alpha-N-arabinofuranosidase.
 
  
 0.912
SDI55931.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-); Belongs to the ABC transporter superfamily.
  
  0.811
SDI89978.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).
 
  0.679
SDI89954.1
Multiple sugar transport system permease protein.
  
  0.674
SDJ03139.1
Raffinose/stachyose/melibiose transport system permease protein.
 
  0.662
SDI33882.1
Multiple sugar transport system permease protein.
 
  0.609
ugpE
Sn-glycerol 3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
  0.607
SDI61115.1
Multiple sugar transport system permease protein.
 
  0.606
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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