STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI53234.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (112 aa)    
Predicted Functional Partners:
SDI53213.1
Serine/threonine-protein kinase RsbW.
 
 0.999
SDI79142.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.997
SDJ17009.1
PAS domain S-box-containing protein.
  
 
 0.992
SDI33948.1
Haem-NO-binding.
 
    0.991
SDI78450.1
Flagellar hook protein FlgE.
   
    0.976
SDJ54530.1
Rod binding protein.
   
    0.976
flgH
Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.974
SDI85673.1
Flagellar motor switch protein FliG.
  
   0.973
SDJ54665.1
Flagellar basal-body rod protein FlgB.
   
    0.972
SDI29872.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.961
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.