Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI20355.1 | SDI53644.1 | SAMN04487993_100212 | SAMN04487993_100695 | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | Hypothetical protein. | 0.712 |
SDI20355.1 | SDI54080.1 | SAMN04487993_100212 | SAMN04487993_1006115 | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.636 |
SDI20355.1 | SDI98269.1 | SAMN04487993_100212 | SAMN04487993_101425 | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.881 |
SDI20355.1 | SDJ00522.1 | SAMN04487993_100212 | SAMN04487993_1014134 | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.400 |
SDI20355.1 | SDJ25562.1 | SAMN04487993_100212 | SAMN04487993_102355 | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | Glutamate synthase (NADPH) large subunit. | 0.953 |
SDI20355.1 | purU | SAMN04487993_100212 | SAMN04487993_1003112 | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.767 |
SDI53644.1 | SDI20355.1 | SAMN04487993_100695 | SAMN04487993_100212 | Hypothetical protein. | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | 0.712 |
SDI53644.1 | SDI53667.1 | SAMN04487993_100695 | SAMN04487993_100696 | Hypothetical protein. | Hypothetical protein. | 0.587 |
SDI53644.1 | SDI54080.1 | SAMN04487993_100695 | SAMN04487993_1006115 | Hypothetical protein. | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.446 |
SDI53644.1 | SDI54688.1 | SAMN04487993_100695 | SAMN04487993_1006145 | Hypothetical protein. | Putative spermidine/putrescine transport system substrate-binding protein. | 0.493 |
SDI53644.1 | SDI98269.1 | SAMN04487993_100695 | SAMN04487993_101425 | Hypothetical protein. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.831 |
SDI53644.1 | SDJ00522.1 | SAMN04487993_100695 | SAMN04487993_1014134 | Hypothetical protein. | Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.462 |
SDI53644.1 | SDJ25562.1 | SAMN04487993_100695 | SAMN04487993_102355 | Hypothetical protein. | Glutamate synthase (NADPH) large subunit. | 0.882 |
SDI53644.1 | lepA | SAMN04487993_100695 | SAMN04487993_1003240 | Hypothetical protein. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.641 |
SDI53644.1 | potA | SAMN04487993_100695 | SAMN04487993_1006146 | Hypothetical protein. | Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. | 0.473 |
SDI53644.1 | purU | SAMN04487993_100695 | SAMN04487993_1003112 | Hypothetical protein. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.609 |
SDI53667.1 | SDI53644.1 | SAMN04487993_100696 | SAMN04487993_100695 | Hypothetical protein. | Hypothetical protein. | 0.587 |
SDI54080.1 | SDI20355.1 | SAMN04487993_1006115 | SAMN04487993_100212 | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | Dimethylglycine dehydrogenase; Belongs to the GcvT family. | 0.636 |
SDI54080.1 | SDI53644.1 | SAMN04487993_1006115 | SAMN04487993_100695 | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | Hypothetical protein. | 0.446 |
SDI54080.1 | SDI98269.1 | SAMN04487993_1006115 | SAMN04487993_101425 | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.819 |
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