STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI61541.1Glycosyltransferase involved in cell wall bisynthesis. (357 aa)    
Predicted Functional Partners:
SDI61502.1
CDP-paratose 2-epimerase.
 
 
  0.967
SDI61552.1
Spore maturation protein CgeB.
    0.961
SDI61487.1
dTDP-L-rhamnose 4-epimerase.
 
  
  0.957
SDI61584.1
Spore maturation protein CgeB.
 
    0.957
SDI61597.1
Spore maturation protein CgeB.
 
    0.957
SDI61632.1
tRNA (mo5U34)-methyltransferase.
 
     0.955
SDI61519.1
B12-binding domain/radical SAM domain protein, rhizo-twelve system.
 
     0.936
SDI61617.1
UDP-glucuronate decarboxylase.
 
 
  0.888
SDI61468.1
Hypothetical protein.
 
     0.884
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.763
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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