Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI53573.1 | SDI59632.1 | SAMN04487993_100692 | SAMN04487993_100722 | (R)-ethylmalonyl-CoA mutase. | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | 0.693 |
SDI53573.1 | SDI59656.1 | SAMN04487993_100692 | SAMN04487993_100723 | (R)-ethylmalonyl-CoA mutase. | Acyl-CoA dehydrogenase. | 0.745 |
SDI53573.1 | SDI59675.1 | SAMN04487993_100692 | SAMN04487993_100724 | (R)-ethylmalonyl-CoA mutase. | Acyl-CoA dehydrogenase. | 0.745 |
SDI53573.1 | SDJ16036.1 | SAMN04487993_100692 | SAMN04487993_102014 | (R)-ethylmalonyl-CoA mutase. | methylmalonyl-CoA mutase. | 0.998 |
SDI53573.1 | sucC | SAMN04487993_100692 | SAMN04487993_1006111 | (R)-ethylmalonyl-CoA mutase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.890 |
SDI53573.1 | sucD | SAMN04487993_100692 | SAMN04487993_1006113 | (R)-ethylmalonyl-CoA mutase. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.895 |
SDI59622.1 | SDI59632.1 | SAMN04487993_100721 | SAMN04487993_100722 | Acyl dehydratase. | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | 0.588 |
SDI59622.1 | SDI59656.1 | SAMN04487993_100721 | SAMN04487993_100723 | Acyl dehydratase. | Acyl-CoA dehydrogenase. | 0.798 |
SDI59622.1 | SDI59675.1 | SAMN04487993_100721 | SAMN04487993_100724 | Acyl dehydratase. | Acyl-CoA dehydrogenase. | 0.812 |
SDI59622.1 | SDI59694.1 | SAMN04487993_100721 | SAMN04487993_100725 | Acyl dehydratase. | Hypothetical protein. | 0.459 |
SDI59632.1 | SDI53573.1 | SAMN04487993_100722 | SAMN04487993_100692 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | (R)-ethylmalonyl-CoA mutase. | 0.693 |
SDI59632.1 | SDI59622.1 | SAMN04487993_100722 | SAMN04487993_100721 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | Acyl dehydratase. | 0.588 |
SDI59632.1 | SDI59656.1 | SAMN04487993_100722 | SAMN04487993_100723 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | Acyl-CoA dehydrogenase. | 0.795 |
SDI59632.1 | SDI59675.1 | SAMN04487993_100722 | SAMN04487993_100724 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | Acyl-CoA dehydrogenase. | 0.795 |
SDI59632.1 | SDI59694.1 | SAMN04487993_100722 | SAMN04487993_100725 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | Hypothetical protein. | 0.503 |
SDI59632.1 | SDI59818.1 | SAMN04487993_100722 | SAMN04487993_100730 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. | 0.419 |
SDI59632.1 | SDJ16036.1 | SAMN04487993_100722 | SAMN04487993_102014 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | methylmalonyl-CoA mutase. | 0.693 |
SDI59632.1 | sucC | SAMN04487993_100722 | SAMN04487993_1006111 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.600 |
SDI59632.1 | sucD | SAMN04487993_100722 | SAMN04487993_1006113 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.607 |
SDI59656.1 | SDI53573.1 | SAMN04487993_100723 | SAMN04487993_100692 | Acyl-CoA dehydrogenase. | (R)-ethylmalonyl-CoA mutase. | 0.745 |
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