STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI72335.1TRAP transporter, 4TM/12TM fusion protein. (727 aa)    
Predicted Functional Partners:
SDI72353.1
Hypothetical protein.
 
 
  0.989
SDI41450.1
Hypothetical protein.
  
    0.803
SDI63048.1
Hypothetical protein.
  
    0.802
SDJ45455.1
Hypothetical protein.
  
    0.801
SDI32338.1
Hypothetical protein.
  
    0.795
SDJ09937.1
Hypothetical protein.
  
    0.794
SDJ01840.1
Hypothetical protein.
  
    0.790
SDI91045.1
Hypothetical protein.
  
    0.789
SDI92191.1
Hypothetical protein.
  
    0.787
SDI90853.1
Hypothetical protein.
  
    0.741
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.