STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI86406.1Hypothetical protein. (466 aa)    
Predicted Functional Partners:
SDI86422.1
Membrane dipeptidase.
 
     0.637
SDI34041.1
Hypothetical protein.
  
     0.544
SDJ24819.1
Hypothetical protein.
  
     0.529
SDI32930.1
Acetyltransferase (GNAT) family protein.
  
     0.517
SDI11390.1
cation:H+ antiporter.
  
     0.461
SDI76358.1
Apolipoprotein D and lipocalin family protein.
  
     0.450
SDJ19680.1
Transglycosylase SLT domain-containing protein.
  
     0.447
phnC
Phosphonate transport system ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
       0.434
SDI53429.1
Uncharacterized domain 1-containing protein.
 
     0.420
SDI15005.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.