STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI85541.1Glycine/D-amino acid oxidase. (447 aa)    
Predicted Functional Partners:
SDI61727.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.960
SDJ22680.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.960
SDJ25562.1
Glutamate synthase (NADPH) large subunit.
    
 0.834
SDI85592.1
Acetylornithine deacetylase.
  
    0.786
SDJ05702.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 0.771
SDI20355.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
   
  0.752
SDJ22661.1
Sarcosine oxidase subunit gamma.
  
  0.726
SDI61745.1
Sarcosine oxidase subunit gamma.
  
  0.725
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.703
SDI61709.1
Sarcosine oxidase subunit delta.
  
  0.689
Your Current Organism:
Salipiger marinus
NCBI taxonomy Id: 555512
Other names: CCTCC AB 209064, Citreicella marina, Citreicella marina Lai et al. 2011, Citreicella sp. CK-I3-6, DSM 26424, LMG 25230, LMG:25230, MCCC 1A03060, Roseobacter sp. CK-I3-6, strain CK-I3-6
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